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Element ID
Coordinates (mm10)
Element type
Interacting genes
CNS65
chr2:75439070-75440738
ENH
Gm14396, Gm28793, Gm44463, Hoxd10, Hoxd9
HLEA
chr11:85875857-85878048
ENH
HLEB
chr11:85962963-85963802
ENH
Bcas3, 2610027K06Rik, Tbx2
ZRS
chr5:29314006-29317452
ENH
Shh
hs1
chr8:121003242-121004501
ENH
hs1001
chr4:124477410-124479570
ENH
Gm2164, Pou3f1
hs1004
chr19:14123183-14124906
ENH
Psat1
hs1007
chr12:118725382-118727618
ENH
hs1011
chr18:81164933-81167810
ENH
hs1017
chr2:34254991-34257060
ENH
Pbx3
hs1020
chr18:81897168-81899235
ENH
Atp9b, Gm27239, Sall3
hs1022
chr11:44656049-44658617
ENH
Clint1
hs1024
chr13:78937200-78939059
ENH
3110006O06Rik, Gm38604, A830082K12Rik, Nr2f1, Gm27631, Gm27772, Vax2os
hs1025
chr6:85164794-85166553
ENH
Gm27631, Gm27772, Vax2os, Rab11fip5, Smyd5
hs1035
chr4:24019901-24020200
ENH
Gm30731, Pou3f2
hs1041
chr19:14776361-14778140
ENH
hs1042
chr2:159031538-159034189
ENH
Gm826, Mafb, Gm14221, Lpin3
hs1052
chr13:47310390-47312706
ENH
A330033J07Rik, Gm49291, Id4, A330048O09Rik, A830005F24Rik, Zfp169, Ptpdc1
hs1056
chr18:81152825-81155136
ENH
Galr1
hs1060
chr13:78600658-78603642
ENH
Mctp1, A830082K12Rik, Nr2f1
hs1078
chr19:14564981-14567121
ENH
Psat1, Gnaq
hs1079
chr13:79135658-79137831
ENH
A830082K12Rik, Nr2f1
hs1085
chr4:22834491-22837279
ENH
Gm30731, Pou3f2, Mms22l
hs1086
chr2:160382139-160383533
ENH
hs1092
chr6:99067534-99068493
ENH
Foxp1, Gm20696
hs1093
chr1:41165774-41167470
ENH
Gm20646, Pantr1, Pantr2, Pou3f3, Mrps9, 8430432A02Rik, Tgfbrap1
hs110
chr12:118719042-118721614
ENH
hs1107
chr3:143332508-143334554
ENH
Gm43445, Lmo4
hs1109
chr13:79363048-79365666
ENH
A830082K12Rik, Nr2f1
hs111
chr13:15542710-15545427
ENH
Gm48017, Tbce, Mrpl32, Psma2, AW209491, Gli3, Gm26645, Gm6556
hs1112
chr1:41274809-41277330
ENH
Gm20646, Pantr1, Pantr2, Pou3f3, Mrps9, 8430432A02Rik, Tgfbrap1
hs1114
chr10:87472791-87473750
ENH
Stab2, Dram1
hs1117
chr11:44634961-44636269
ENH
hs1118
chr4:72069165-72070604
ENH
Cdk5rap2
hs1119
chr11:25356124-25357143
ENH
Bcl11a, Gm12063
hs1128
chr4:23147025-23149330
ENH
hs1130
chr11:45549323-45551898
ENH
Ebf1
hs1131
chr1:42242028-42244560
ENH
Gm20646, Pantr1, Pantr2, Pou3f3
hs1139
chr4:123990098-123992559
ENH
Gm2164, Pou3f1, Utp11, Fhl3
hs1147
chr1:41558620-41559699
ENH
Gm20646, Pantr1, Pantr2, Pou3f3
hs1148
chr12:118703134-118704453
ENH
hs1150
chr14:48799139-48801690
ENH
4930572G02Rik, Gm49154, Otx2, Otx2os1, Gm49156
hs1151
chr14:45824671-45827241
ENH
Cdkn3
hs1152
chr11:26006299-26007590
ENH
Bcl11a, Gm12063
hs1153
chr13:79045925-79048514
ENH
A830082K12Rik, Nr2f1
hs1161
chr3:143984118-143986571
ENH
hs1163
chr19:14239068-14242283
ENH
Psat1, C130060C02Rik, Cep78
hs1168
chr12:49991668-49994699
ENH
hs1169
chr18:13222187-13223026
ENH
Gm6457, Ss18, Psma8
hs1170
chr13:78677411-78679742
ENH
Mctp1, A830082K12Rik, Nr2f1
hs1172
chr13:78580492-78582814
ENH
Mctp1, A830082K12Rik, Nr2f1
hs1173
chr9:91087772-91089718
ENH
Tbc1d2b
hs1174
chr11:26120058-26122427
ENH
Gm12065
hs1175
chr13:48383245-48383904
ENH
hs1180
chr18:13665806-13668355
ENH
hs1185
chr1:169343173-169345241
ENH
Pbx1
hs1186
chr18:81830126-81832285
ENH
Gm27239, Sall3
hs1187
chr13:116574680-116576887
ENH
Gm49395, Itga1
hs119
chrX:93408470-93410498
ENH
Arx, Pdk3
hs1192
chr6:15611408-15611587
ENH
hs12
chr8:114744948-114746379
ENH
Gm15655, Maf
hs1202
chr1:168356497-168358717
ENH
Pbx1
hs1203
chr9:90690384-90694866
ENH
hs1208
chr11:45136282-45138321
ENH
Ebf1
hs121
chrX:93309562-93311996
ENH
hs1210
chr11:18915780-18919026
ENH
C1d
hs1212
chr1:40942777-40944397
ENH
Gm20646, Pantr1, Pantr2, Pou3f3, Mrps9
hs1213
chr13:15484890-15487207
ENH
Mrpl32, Psma2, AW209491
hs1217
chr3:143946781-143948608
ENH
Gm43445, Lmo4
hs1218
chr14:48815877-48816296
ENH
4930572G02Rik, Gm49154, Otx2, Otx2os1
hs1220
chr4:23869856-23871699
ENH
Gm30731, Pou3f2
hs1226
chr12:118649729-118652318
ENH
Cdca7l, Sp8
hs123
chrX:92789906-92792244
ENH
hs1233
chr4:23590560-23591843
ENH
Gm30731, Pou3f2
hs1235
chr1:168341325-168343770
ENH
hs1236
chr19:59717055-59719073
ENH
E330013P04Rik
hs124
chr8:87269537-87271978
ENH
hs1247
chr5:41061100-41062715
ENH
Rab28, Nkx3-2, Bod1l
hs1251
chr3:66935212-66936649
ENH
Veph1
hs126
chr14:97086472-97088255
ENH
Dach1, Rpl36a-ps1, Bora, Mzt1
hs1262
chr3:66937987-66940305
ENH
Veph1
hs1271
chr5:111394060-111396159
ENH
Gm26953, Gm27998, Miat, Asphd2
hs1273
chr12:9338781-9340056
ENH
Rdh14
hs1278
chr2:137247603-137249462
ENH
hs1300
chr8:90244433-90246705
ENH
Gm35850
hs1302
chr10:38551938-38556574
ENH
Hdac2, 5930403N24Rik, Marcks
hs1305
chr3:8865769-8867347
ENH
Hey1
hs1309
chr4:98107157-98109847
ENH
E130114P18Rik, Nfia, 0610025J13Rik
hs1310
chr17:15440061-15442151
ENH
Ermard, Fam120b
hs1311
chr9:52147784-52150724
ENH
Atm, Npat
hs1314
chr7:112825098-112827953
ENH
Parva, 2310014F06Rik, Tead1
hs1315
chr13:39523351-39524670
ENH
Gm47061, Gm26688, Tfap2a
hs1316
chr14:12392332-12395318
ENH
hs1319
chr7:131463520-131466071
ENH
hs1321
chr13:116513662-116514141
ENH
hs1322
chr1:138498963-138501215
ENH
Nek7, Lhx9, Zbtb41
hs1324
chr1:190727026-190730523
ENH
Gm28172, Prox1, Prox1os
hs1325
chr6:51075939-51078460
ENH
Gm28308, Hoxa3, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxaas3, Gm27454, Gm27492, Gm27543, Gm27817, Hoxa10, Hoxa11, Hoxa11os
hs1326
chr4:6912416-6915068
ENH
hs1327
chr13:73032990-73036466
ENH
Irx1, Gm20554, Irx2
hs1329
chr14:65245503-65247001
ENH
hs1330
chr3:55965242-55965901
ENH
Dclk1, Gm42608
hs1332
chr3:35086999-35089750
ENH
Ccdc39, AC137708.1, Gm42692, Sox2ot, Gm27611, Gm42693, Sox2
hs1333
chr3:55754773-55758186
ENH
Dclk1, Gm42608
hs1334
chr18:8043256-8045167
ENH
Fzd8, Thoc1
hs1336
chr9:23377710-23379836
ENH
hs1339
chr13:51919522-51922005
ENH
Gadd45g, Nfil3
hs1340
chr13:29608665-29611917
ENH
Gm40841, 2610307P16Rik, Sox4
hs1341
chr10:92555796-92557968
ENH
Rmst
hs1344
chr16:29882474-29884219
ENH
Gm26569, 4632428C04Rik, Hes1, Cpn2
hs1345
chr17:63171888-63173867
ENH
hs1350
chr19:27904201-27905640
ENH
hs1351
chr10:21082099-21084259
ENH
Gm48249, Mtfr2, Myb, Sgk1, Gm26740
hs1352
chr13:26153840-26155836
ENH
hs1358
chr17:10743674-10746459
ENH
6530411M01Rik, 1700110C19Rik, Qk
hs1359
chr4:72166266-72169265
ENH
Cdk5rap2, Megf9
hs1360
chr19:14506736-14508520
ENH
hs1361
chr3:84936946-84938761
ENH
Gatb, Gm15535, Gm37933, Rps3a1
hs1362
chr18:79047820-79052035
ENH
hs1363
chr18:78453905-78456664
ENH
hs1364
chr4:5962627-5963706
ENH
Gm11808, A830012C17Rik, Penk, Impad1
hs1366
chr17:30377893-30379992
ENH
hs1368
chr1:133079543-133081905
ENH
Etnk2
hs1369
chr12:90131471-90132485
ENH
Nrxn3
hs1371
chr18:55519512-55520788
ENH
hs1374
chr6:61042008-61043674
ENH
hs1375
chr18:55196148-55196747
ENH
hs138
chr14:98154591-98157050
ENH
Bora, Mzt1
hs1383
chr8:98309173-98309532
ENH
hs1384
chr18:72724774-72726120
ENH
hs1385
chr12:28817230-28818444
ENH
hs1386
chr2:50970260-50970379
ENH
Rbm43
hs1387
chr14:13770336-13771777
ENH
hs1389
chr3:39047655-39049659
ENH
Intu
hs1391
chr13:34246951-34249852
ENH
Pxdc1, Gm36839, Prpf4b, Cdyl, Gm48706, Rpp40, Ppp1r3g
hs1393
chr14:78287267-78289416
ENH
Ccdc122, Lacc1, Enox1, Gm10132
hs1394
chr14:103762927-103764995
ENH
Pou4f1
hs1397
chr18:65530030-65532676
ENH
Oacyl
hs1413
chr3:67212395-67214434
ENH
Veph1
hs1414
chr14:46604967-46606394
ENH
Ubb-ps, Bmp4, Gm15222
hs1418
chr5:28178288-28180044
ENH
En2, Gm43610, Shh, Lmbr1, Nom1, Mnx1, Ube3c
hs1419
chr13:116086549-116088219
ENH
hs1422
chr3:6182012-6184593
ENH
hs1425
chr5:132032459-132035601
ENH
hs1427
chr10:125809640-125811484
ENH
Lrig3
hs1428
chr3:99666059-99667474
ENH
Hao2, Gm43120, Tbx15
hs1430
chr6:52966608-52969723
ENH
Gm27454, Gm27492, Gm27543, Gm27817, Hoxa10, Hoxa11, Hoxa11os, Hoxa9, 9530018H14Rik, Gm27383, Gm27543, Gm27866, Gm27985, Hottip, Hoxa13
hs1431
chr16:15053385-15054284
ENH
Snai2, Ube2v2, Mcm4, Prkdc, Cebpd, Spidr
hs1432
chr13:91186850-91190199
ENH
Ssbp2
hs1433
chr3:30104400-30108968
ENH
Gm37652, Mecom, Mecomos
hs1435
chr7:98957121-98958830
ENH
Lrrc32, Gm15506, Thap12, Wnt11
hs1436
chr14:28972664-28974463
ENH
Gm2670, Wnt5a
hs1437
chr14:21865669-21867352
ENH
hs1440
chr18:78237098-78239257
ENH
Setbp1, Pard6g
hs1442
chr1:163897046-163900155
ENH
Fmo2, Gm37644, Prrx1
hs1445
chr11:75048409-75050731
ENH
Smg6, Rps12-ps19, Srr, Hic1, Serpinf1, Wdr81, Gm45606, Slc43a2
hs1450
chr4:98242209-98244399
ENH
E130114P18Rik, Nfia
hs1452
chr10:45894288-45894827
ENH
Bves
hs1453
chr16:29893148-29896216
ENH
4632428C04Rik, Hes1, Cpn2
hs1460
chr5:74431970-74433714
ENH
Chic2, Gsx2, Gm42802, Pdgfra
hs1463
chr13:60267087-60270532
ENH
Gas1, Gm48488, Gm34961, Tut7, Gm47942
hs1465
chr6:51194622-51198231
ENH
5730596B20Rik, Gm15050, Gm27477, Gm27861, Gm27867, Gm27868, Gm29430, Hotairm1, Hoxa1, Hoxa2, Hoxaas2, Gm29430, Hoxa3, Hoxaas3, Hoxa4, Gm28308, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Gm27454, Gm27492, Gm27543, Gm27817, Hoxa10, Hoxa11, Hoxa11os, 9530018H14Rik, Gm27383, Gm27543, Gm27866, Gm27985, Hottip, Hoxa13, Evx1, Evx1os, Skap2
hs1466
chr12:86800395-86804134
ENH
Pgf, Irf2bpl, Cipc, Zdhhc22, Ism2
hs1467
chr11:111827949-111829442
ENH
BC006965, Sox9, 2610035D17Rik
hs1473
chr13:56158927-56160831
ENH
hs1475
chr16:72686570-72687949
ENH
Robo2
hs1477
chr2:59562217-59562516
ENH
Wdsub1, Ly75
hs1479
chr6:84195666-84197916
ENH
Cyp26b1, Smyd5
hs1482
chr15:56165592-56168114
ENH
hs1484
chr4:98221730-98224636
ENH
E130114P18Rik, Nfia
hs1485
chr4:95317123-95319462
ENH
Jun, Junos, Fggy, Hook1
hs1486
chr12:104901198-104902860
ENH
Gm10000, Gsc
hs1487
chr4:106863746-106866984
ENH
Ssbp3, Cyb5rl, Mrpl37, Tceanc2, Tmem59
hs1488
chr7:142548315-142550020
ENH
Lsp1, Tnnt3, H19, Igf2, Igf2os
hs149
chr17:85562343-85563673
ENH
hs1491
chr14:24984967-24987489
ENH
Rps24, Gm47920, Zmiz1, Zmiz1os1
hs1496
chr12:27564419-27567345
ENH
Gm46344, Sox11
hs1497
chr11:64898966-64900764
ENH
Pmp22, Hs3st3b1
hs1500
chr14:21462385-21464049
ENH
Samd8
hs1507
chr1:75770058-75773197
ENH
Epha4, Mir6352, Gm28386
hs1510
chr9:57806214-57808082
ENH
Arid3b
hs1516
chr16:95847917-95849588
ENH
Erg, Ets2
hs1517
chr11:109269018-109271202
ENH
hs152
chr8:89006393-89008012
ENH
hs1523
chr12:50120052-50121911
ENH
hs1526
chr1:41603697-41606058
ENH
Gm20646, Pantr1, Pantr2, Pou3f3
hs1530
chr19:15835241-15839146
ENH
Tle4
hs1533
chr13:48158256-48162111
ENH
hs1535
chr11:24330054-24333979
ENH
hs1538
chr12:56458924-56460465
ENH
Gm15524, Pax9, Foxa1, Ttc6
hs1539
chr12:49973819-49974898
ENH
3110039M20Rik, Foxg1, Gm43517
hs1543
chr16:30128808-30130450
ENH
Gm26569
hs1544
chr18:14063388-14065262
ENH
hs1545
chr3:130961695-130964104
ENH
Lef1, Lef1os1, Gm42449
hs1546
chr4:124359298-124360473
ENH
Gm12905, Rragc, Gm2164, Pou3f1, Utp11
hs1548
chr16:91104187-91107315
ENH
Gm49614, Ifnar2, Ifngr2
hs1554
chr1:41936018-41937045
ENH
Gm20646, Pantr1, Pantr2, Pou3f3
hs1555
chr1:41389098-41390679
ENH
Gm20646, Pantr1, Pantr2, Pou3f3, Mrps9, Gpr45, 8430432A02Rik, Tgfbrap1
hs1557
chr9:118318233-118319432
ENH
hs1559
chr15:85463530-85466091
ENH
Atxn10, AU022754, Wnt7b
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